Recipe workflow

GenomeSpace recipes provide step-by-step instructions for performing integrative bioinformatic data analyses using GenomeSpace tools and data sources. Recipes guide users through common analyses, starting with obtaining input data, followed by analyzing data by passing it to GenomeSpace-enabled tools. In addition, recipes guide users in the interpretation of the results of analyses.

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Featured Recipe

Identify an up- or down-regulated pathway from expression data

Gp msigdb

This recipe provides an outline of one method to identify known biological functions for genes that are differentially expressed between two conditions or phenotypes, using microarray data. Given a set of differentially expressed genes, the goal is to infer which biological functions (for example, Gene Ontology biological processes) are overrepresented in the set of reference genes found to be differentially expressed.

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